rs33197259 SNP Detail

Summary

• ID
  rs33197259
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:41656888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAAATTG TACTTCTAAT
  TTTGATAATT CATAGTAAAA TGAAGTAATG AAAGACAACA GATTGGGTTG AATATCAATG
  TTTATAATTC ATTTTCCATA ATATTTATAC ACATATAAAC ATCCACCTCT ATCTATTTAT
  AATCTTATAC ATGTTGGATT TACTTCTCTA TAGATAACTC CACAACAACC AAAACACAGT
  K
  ACGTGTTGAT ATGTAATATT TTAAAACATT TGAGCATTTG TGAGATATAA ACTTCAATGG
  GGGGAAAGGA CACTTCATAG AGTTAAAACT CTAATATATT TCAAATATAT TATAAGGATG
  TATATCTAGT GTGGATCAAA AACTTACTCT GATAAAATGT AGTAAAACAC ACAGGTACAC
  ACATAAACCA CACACACACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss47268380	NES11089422	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs33197259					SNP	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47268380	NES11089422	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:41656888 () rs orientation: forward

Symbol	Name	Function Class
Gm70758	predicted gene, 70758	within coordinates