rs33197947 SNP Detail

Summary

• ID
  rs33197947
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155868770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AGGCGTCAGA CCCAAGCACA GAGTTGTTTG TCCTCGTCCG GGTGGCCGTC
  S
  GCCAGATCTC CGCTGCTCCT GGGCGGGCGG CGCGGAGCCG GGGTCCTCGC           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	MOLF/EiJ
ss46783965	NES10996753	PERLEGEN	MM_PANEL2	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	MOLF/EiJ
rs33197947					SNP	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46783965	NES10996753	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155868770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15485	CpG island 15485	within coordinates
Rr606569	regulatory region 606569	147 bp distal
Rr606570	regulatory region 606570	332 bp proximal
Rr606571	regulatory region 606571	1669 bp proximal
Tmem278	transmembrane protein 278	within coordinates
Tssr44971	transcription start site region 44971	283 bp upstream
Tssr44972	transcription start site region 44972	585 bp downstream
Tssr44973	transcription start site region 44973	623 bp downstream
Tssr44974	transcription start site region 44974	695 bp downstream
Tssr44975	transcription start site region 44975	709 bp downstream
Tssr44976	transcription start site region 44976	736 bp downstream
Tssr44977	transcription start site region 44977	746 bp downstream
Tssr44978	transcription start site region 44978	1551 bp downstream
Tssr44979	transcription start site region 44979	1570 bp downstream