rs33198038 SNP Detail

Summary

• ID
  rs33198038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:41657226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACTTAC TCTGATAAAA
  TGTAGTAAAA CACACAGGTA CACACATAAA CCACACACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACCCCTTTCT CCAGAGAGCT AGAATGAAAT CCTGCTGAAT
  TGGTAGCAGG TTAGAGATCA GTCAGGCTAC ATAGGTTTTT GTTTTTATTT GAAATTATTT
  R
  TAGAATTTAG TTTCTCAGAA GCCTACAATC CAGTGGCAAA TGAGCATTTC TCCTCTGCAG
  TCGCATTGCT CCTGAGGCTG CTGGAAAGAA GTACACAGGG CAGGATGTAT GGAAAGCAGA
  TTAGAAACTC TAATTGAGAT GACCATTCAG GCTGTGTTTG CTCTCTTCTC TCCCAGCCGT
  GTACTGCTTT CAAGCATCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47268389	NES11089309	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33198038					SNP	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47268389	NES11089309	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:41657226 () rs orientation: forward

Symbol	Name	Function Class
Gm70758	predicted gene, 70758	within coordinates