rs33198050 SNP Detail

Summary

• ID
  rs33198050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155923943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGA GGATGCAGAT CAAACACCAG
  Y
  TCTGTCGAAA CTCAGGAAGT TTACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	DBA/2J	KK/HlJ	LG/J	SM/J
ss46784451	NES10993748	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T
ss148117593	ENSMUSSNP1582887	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss321443269	CHEV_4_155213595	CHEVERUD	SCREENING_POP	f	SNP							T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	DBA/2J	KK/HlJ	LG/J	SM/J
rs33198050					SNP	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784451	NES10993748	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155923943 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	1326 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	194 bp upstream
Mxra8os	matrix-remodelling associated 8, opposite strand	6 bp downstream
Rr398927	regulatory region 398927	1698 bp upstream
Tssr40724	transcription start site region 40724	189 bp upstream
Tssr40725	transcription start site region 40725	207 bp upstream
Tssr40726	transcription start site region 40726	238 bp upstream
Tssr40727	transcription start site region 40727	283 bp upstream
Tssr40728	transcription start site region 40728	341 bp upstream
Tssr40729	transcription start site region 40729	1615 bp upstream
Tssr40730	transcription start site region 40730	1635 bp upstream
Tssr40731	transcription start site region 40731	1660 bp upstream
Tssr40732	transcription start site region 40732	1682 bp upstream
Tssr40733	transcription start site region 40733	1926 bp upstream
Tssr44980	transcription start site region 44980	1542 bp downstream
Tssr44981	transcription start site region 44981	1608 bp downstream