rs33198053 SNP Detail

Summary

• ID
  rs33198053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155923953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAT CAAACACCAG TTCTGTCGAA
  R
  CTCAGGAAGT TTACCAGATG CTTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46784454	NES10993750	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A		G	G
ss148117600	ENSMUSSNP2604801	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G
ss321443270	CHEV_4_155213605	CHEVERUD	SCREENING_POP	f	SNP						A			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs33198053					SNP	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784454	NES10993750	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155923953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	1316 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	184 bp upstream
Mxra8os	matrix-remodelling associated 8, opposite strand	within coordinates
Rr398927	regulatory region 398927	1688 bp upstream
Tssr40724	transcription start site region 40724	179 bp upstream
Tssr40725	transcription start site region 40725	197 bp upstream
Tssr40726	transcription start site region 40726	228 bp upstream
Tssr40727	transcription start site region 40727	273 bp upstream
Tssr40728	transcription start site region 40728	331 bp upstream
Tssr40729	transcription start site region 40729	1605 bp upstream
Tssr40730	transcription start site region 40730	1625 bp upstream
Tssr40731	transcription start site region 40731	1650 bp upstream
Tssr40732	transcription start site region 40732	1672 bp upstream
Tssr40733	transcription start site region 40733	1916 bp upstream
Tssr44980	transcription start site region 44980	1532 bp downstream
Tssr44981	transcription start site region 44981	1598 bp downstream