rs33198253 SNP Detail

Summary

• ID
  rs33198253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:70352893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAA ACACTCTCCA CATAGCCTAG
  R
  CTAGCCTTGA ACTTGTTGTG ACCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss46246172	mCV22895296	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss145115891	ENSMUSSNP3723609	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss322697757	CHEV_8_72424142	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs33198253					SNP	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70352893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20428	CpG island 20428	1152 bp proximal
Ndufa13	NADH:ubiquinone oxidoreductase subunit A13	Intron
Rr400887	regulatory region 400887	1288 bp upstream
Rr664594	regulatory region 664594	987 bp distal
Rr664595	regulatory region 664595	1451 bp proximal
Tssk6	testis-specific serine kinase 6	1941 bp upstream
Tssr2594	transcription start site region 2594	1525 bp upstream
Tssr77689	transcription start site region 77689	1935 bp upstream
Tssr81543	transcription start site region 81543	891 bp downstream
Tssr81544	transcription start site region 81544	1389 bp downstream
Tssr81545	transcription start site region 81545	1418 bp downstream
Tssr81546	transcription start site region 81546	1742 bp downstream
Tssr81547	transcription start site region 81547	1772 bp downstream