rs33198717 SNP Detail

Summary

• ID
  rs33198717
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:45008829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT TCTAGAGATC CATAAAACTT
  Y
  TTAACAATTT GTAAAACATT TATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45249103	mCV24323393	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss146484909	ENSMUSSNP599182	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss320273566	CHEV_2_44974337	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33198717					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45008829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11634	CpG island 11634	1260 bp distal
Gm28643	predicted gene 28643	within coordinates
Rr373117	regulatory region 373117	1167 bp downstream
Rr556444	regulatory region 556444	1433 bp distal
Rr556445	regulatory region 556445	956 bp distal
Tssr17636	transcription start site region 17636	1533 bp downstream
Tssr23988	transcription start site region 23988	1819 bp upstream
Tssr23989	transcription start site region 23989	1472 bp upstream
Tssr23990	transcription start site region 23990	1442 bp upstream
Tssr23991	transcription start site region 23991	1406 bp upstream
Tssr23992	transcription start site region 23992	1301 bp upstream
Tssr23993	transcription start site region 23993	1278 bp upstream
Zeb2	zinc finger E-box binding homeobox 2	1422 bp upstream