rs33198796 SNP Detail

Summary

• ID
  rs33198796
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155923984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT TTACCAGATG CTTGGCACCC
  R
  CTTGGCCTCA GGAATCTTCA CATCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46784457	NES10993752	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G		G	A	G	A		A
ss148117604	ENSMUSSNP5075162	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss321443271	CHEV_4_155213636	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33198796					SNP	A	A	A	A	G	A	A	A	G	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784457	NES10993752	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155923984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	1285 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	153 bp upstream
Mxra8os	matrix-remodelling associated 8, opposite strand	within coordinates
Rr398927	regulatory region 398927	1657 bp upstream
Rr606588	regulatory region 606588	1292 bp distal
Rr606589	regulatory region 606589	within coordinates
Rr606590	regulatory region 606590	641 bp proximal
Rr606591	regulatory region 606591	1557 bp proximal
Rr606592	regulatory region 606592	1584 bp proximal
Rr606593	regulatory region 606593	1620 bp proximal
Tssr40724	transcription start site region 40724	148 bp upstream
Tssr40725	transcription start site region 40725	166 bp upstream
Tssr40726	transcription start site region 40726	197 bp upstream
Tssr40727	transcription start site region 40727	242 bp upstream
Tssr40728	transcription start site region 40728	300 bp upstream
Tssr40729	transcription start site region 40729	1574 bp upstream
Tssr40730	transcription start site region 40730	1594 bp upstream
Tssr40731	transcription start site region 40731	1619 bp upstream
Tssr40732	transcription start site region 40732	1641 bp upstream
Tssr40733	transcription start site region 40733	1885 bp upstream
Tssr44980	transcription start site region 44980	1501 bp downstream
Tssr44981	transcription start site region 44981	1567 bp downstream