rs33198906 SNP Detail

Summary

• ID
  rs33198906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105504810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGAGTCTT GGCGGGGATA CATAAGCACC ACACACAGAT
  AACCGGTTCC TCACAACGAC ACACGTTGAC ACACCAAGAA AGCCGGCGAG GACACACACT
  Y
  GCAGAATCTC TCCCAGCATT GGTCAAACCC CACCCCCACC CTCAGGCTTC CACTACTTCC
  CCTCCCCTCT TGTCTTCCCC TCCTTTCGAT GGCTTGGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45248861	mCV27580897	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147168842	ENSMUSSNP5439054	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33198906					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105504810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12019	CpG island 12019	1874 bp distal
Cpgi12020	CpG island 12020	132 bp proximal
Pax6	paired box 6	within coordinates
Rr370602	regulatory region 370602	within coordinates
Tssr19252	transcription start site region 19252	43 bp downstream
Tssr19253	transcription start site region 19253	28 bp downstream
Tssr19254	transcription start site region 19254	78 bp upstream
Tssr19255	transcription start site region 19255	964 bp upstream
Tssr19256	transcription start site region 19256	1013 bp upstream
Tssr19257	transcription start site region 19257	1150 bp upstream
Tssr19258	transcription start site region 19258	1171 bp upstream
Tssr19259	transcription start site region 19259	1204 bp upstream
Tssr19260	transcription start site region 19260	1221 bp upstream
Tssr19261	transcription start site region 19261	1241 bp upstream
Tssr25564	transcription start site region 25564	484 bp upstream
Tssr25565	transcription start site region 25565	816 bp downstream