rs33200364 SNP Detail

Summary

• ID
  rs33200364
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155924976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTAGGATT GACTCCCTGT
  GCCATCTCTT GGGTCTCTGC TCTTGAGGAA GGCTAGCAGG GGAACATACT GCACCTAGGG
  TGTGTGTGTG TGTGGAGGGG TGGGGATGGG GGAGGGTAGG ACAGGGCTAT GAATGCCTGA
  GGTCTGAAAG TTCCTAAAAG CTCAGCACAG ACGCACATAC AACTTCTGTT TGTCCCAGTG
  Y
  CATGCTAGAA CAGCTCTGGT GGACTTGTTG CTGCAATGTA GCCATGGCTA CTTCAAGTTC
  ACACTTTAGA ACAAGCCTGC AGAGAGTCAC ATCCTTTCCT ACTTCTCGCT GCCAGATGTC
  TGGTTTCCCA CTCACTCTCC CAGAACTTGT TAAGTGGGTA ACATGGCAAC AAACCTGCCA
  TGACTGCAGG AGGCCCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46784472	NES10993763	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33200364					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784472	NES10993763	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155924976 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	293 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	341 bp upstream
Rr398927	regulatory region 398927	665 bp upstream
Rr606589	regulatory region 606589	783 bp distal
Rr606590	regulatory region 606590	within coordinates
Rr606591	regulatory region 606591	565 bp proximal
Rr606592	regulatory region 606592	592 bp proximal
Rr606593	regulatory region 606593	628 bp proximal
Tssr40724	transcription start site region 40724	835 bp downstream
Tssr40725	transcription start site region 40725	815 bp downstream
Tssr40726	transcription start site region 40726	757 bp downstream
Tssr40727	transcription start site region 40727	695 bp downstream
Tssr40728	transcription start site region 40728	679 bp downstream
Tssr40729	transcription start site region 40729	582 bp upstream
Tssr40730	transcription start site region 40730	602 bp upstream
Tssr40731	transcription start site region 40731	627 bp upstream
Tssr40732	transcription start site region 40732	649 bp upstream
Tssr40733	transcription start site region 40733	893 bp upstream
Tssr44980	transcription start site region 44980	509 bp downstream
Tssr44981	transcription start site region 44981	575 bp downstream