rs33200370 SNP Detail

Summary

• ID
  rs33200370
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155925909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATC TTCTGCCAAG CAGCTGTGGA
  S
  AGAGGCGATG AAGGGGTGTA CACCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46784478	NES10993768	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C		C	G	C		G
ss148117660	ENSMUSSNP4629776	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				G
ss321443283	CHEV_4_155215561	CHEVERUD	SCREENING_POP	f	SNP								C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33200370					SNP	G	G	G	G	G	G	C	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784478	NES10993768	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155925909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	within coordinates
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	Coding-NonSynonymous
Mxra8os	matrix-remodelling associated 8, opposite strand	1274 bp upstream
Rr398927	regulatory region 398927	within coordinates
Rr606589	regulatory region 606589	1716 bp distal
Rr606590	regulatory region 606590	784 bp distal
Rr606591	regulatory region 606591	347 bp distal
Rr606592	regulatory region 606592	within coordinates
Rr606593	regulatory region 606593	284 bp distal
Tssr40724	transcription start site region 40724	1768 bp downstream
Tssr40725	transcription start site region 40725	1748 bp downstream
Tssr40726	transcription start site region 40726	1690 bp downstream
Tssr40727	transcription start site region 40727	1628 bp downstream
Tssr40728	transcription start site region 40728	1612 bp downstream
Tssr40729	transcription start site region 40729	344 bp downstream
Tssr40730	transcription start site region 40730	314 bp downstream
Tssr40731	transcription start site region 40731	285 bp downstream
Tssr40732	transcription start site region 40732	277 bp downstream
Tssr40733	transcription start site region 40733	within coordinates
Tssr40734	transcription start site region 40734	1599 bp upstream
Tssr44980	transcription start site region 44980	397 bp upstream
Tssr44981	transcription start site region 44981	348 bp upstream