rs33200472 SNP Detail

Summary

• ID
  rs33200472
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43670694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTA GAGGATCCTG CTTGCAGCAA
  W
  CTATGGATCA TAGATCATCA ATAAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39507263	mCV25275191	ABI	CRAMUS_MOUSE	f	SNP		T	A				T		T
ss62737793	NES17343014	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	T	T		A		T		T	A	A	T		A
ss145668083	ENSMUSSNP1329301	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						T
ss325395365	CHEV_17_43496752	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33200472					SNP	T	T	A	T	T	T	T	A	T	T	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62737793	NES17343014	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43670694 () rs orientation: forward

Symbol	Name	Function Class
Adgrf5	adhesion G protein-coupled receptor F5	648 bp upstream
Rr527086	regulatory region 527086	158 bp proximal
Rr527087	regulatory region 527087	659 bp proximal
Tssr144671	transcription start site region 144671	217 bp upstream
Tssr144672	transcription start site region 144672	519 bp upstream
Tssr144673	transcription start site region 144673	560 bp upstream
Tssr144674	transcription start site region 144674	583 bp upstream
Tssr144675	transcription start site region 144675	620 bp upstream
Tssr148115	transcription start site region 148115	1548 bp downstream