rs33201028 SNP Detail

Summary

• ID
  rs33201028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34574993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGTCACTGT TCTGACACCA GTATTCTCGA TTCTGAGCCG
  AAAGTTGCCC AGAAACACCC TGTCTCTCTA GATCTTTGTC CTGTGATAAC TGAATGCTTG
  Y
  TTCCGGGGCG ATCCACGCCC TCTTCTGGCT TGAGAGACAA CATTCACACG CACACACCTT
  AACACCGATA CATGCATATA CATACAGCTG TATATGTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46246948	mCV24922128	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		T
ss60592243	NES16320138	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T		C	T	C	C		C	C	C	C		C
ss149092936	ENSMUSSNP1653719	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss322575049	CHEV_8_35170893	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33201028					SNP	T	T	T	T	T	C	T	C	C	T	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592243	NES16320138	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34574993 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	276 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	507 bp upstream
Tssr80889	transcription start site region 80889	50 bp upstream
Tssr80890	transcription start site region 80890	within coordinates
Tssr80891	transcription start site region 80891	604 bp downstream
Tssr80892	transcription start site region 80892	672 bp downstream
Tssr80893	transcription start site region 80893	953 bp downstream