rs33201224 SNP Detail

Summary

• ID
  rs33201224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123649780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGCCCTAG CCCCGAGGGG TGGGTGGAGC AACAGCTTTA
  GAGTGACTCA ACTCCTATCA CCAGGAGAAA CAATTCTGAA AACTGGTCCC TGGTGGTCAG
  Y
  AGGAAATGAT CTTTATTTTT ATGCTAACAA CCTTATTTAA TTAAAAGTGC TGAAACCTGG
  CAAACTTCTC TAGCATGTGC TGAATGGGAG TGTCAGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45749822	mCV24599462	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss149195340	ENSMUSSNP2979596	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss321670965	CHEV_5_123961726	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33201224					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123649780 () rs orientation: forward

Symbol	Name	Function Class
B3gnt4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	within coordinates
Diablo	diablo, IAP-binding mitochondrial protein	within coordinates
Gm15751	predicted gene 15751	within coordinates
Gm49027	predicted gene, 49027	365 bp downstream
Rr620216	regulatory region 620216	471 bp proximal