rs33201710 SNP Detail

Summary

• ID
  rs33201710
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6155516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCACCGTGT GACTCCCCCC AGGGTAGAAG AAACAGAGTG
  TAATGTTCAA AGAAATGTCA CATATTCCTC ACTGCTTAAT AGGGAATTGT AAGATGGTAA
  S
  AAGTTTTTCT CACACTTGAA CTTGGAGCCA AGGGAAAGGC AGTTAACAGA GCCAGCAACA
  CTGAACAAAA CGAGCTCGTT GGAGTAACTG TCTTCAGCA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39506678	mCV23635636	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	C
ss145081302	ENSMUSSNP907744	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
ss325290088	CHEV_17_6105241	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33201710					SNP	G	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6155516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8568	CpG island 8568	1111 bp proximal
Gm65964	predicted gene, 65964	848 bp downstream
Rr340081	regulatory region 340081	484 bp proximal
Rr405018	regulatory region 405018	1475 bp upstream
Tssr142458	transcription start site region 142458	1223 bp upstream
Tssr142459	transcription start site region 142459	1280 bp upstream
Tssr142460	transcription start site region 142460	1323 bp upstream
Tssr142461	transcription start site region 142461	1367 bp upstream
Tssr142462	transcription start site region 142462	1567 bp upstream
Tssr142463	transcription start site region 142463	1583 bp upstream
Tssr142464	transcription start site region 142464	1609 bp upstream
Tssr142465	transcription start site region 142465	1639 bp upstream
Tssr142466	transcription start site region 142466	1667 bp upstream
Tssr142467	transcription start site region 142467	1893 bp upstream
Tssr146313	transcription start site region 146313	1037 bp downstream
Tssr146314	transcription start site region 146314	1234 bp downstream
Tssr146315	transcription start site region 146315	1248 bp downstream
Tulp4	TUB like protein 4	1012 bp upstream