rs33201739 SNP Detail

Summary

• ID
  rs33201739
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33858281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGATGACAG GTACTGCTCC TGACTTTGTT ATGTATGAGT ACTGAAGCTA GAACTCAGGC
  CTGCATGACA AGTACTTTAC CTACTGAGAA ATCTCTCTAG TCCCCCCCAA CTAAATTTTA
  ACAGTTTATA GTCAAACTGG GTATGGTGGT ATACACCTGT AATGCCAGCA CTCAGATGGC
  TGAAGCAGTA GAACTGTTGA ATCCCAGCCT GGGCTACATA GTGAGAAACT GACTTAAAAT
  AAACAAAAAA CAAAAAAGGA AAGGAAAGGA AAGGGAAAGG GAAGAAAAAG AGAGGGGGAG
  W
  GGGGAGAGGA GAGGAGAGAA GAGAGAAGAG AAAAAGAAAA GCAAGCAAGC AAGCTAAACT
  AATGGTGGCA CACACCTGTA ATCTCAGCAC ATGGGAGGCA GAGGCAGAAG GTTATCCTCA
  ACTATAAAGC AAGTTTGAGG CCAGCCCAGG ATATATGAGA CCCTGCTTCA AAAAACAAAT
  TAAAAAAAAG GAGGAGGAAG AGGAGGAGGA GAGGACGATG ACAAAAAACC CTCATCACTG
  GGAAGATATA GTTCATTGCT AGAGCTTGTT TAGCAAGGTG CTAAGTTCCA TCCCTAACAC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss39506871	mCV24098848	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33201739					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33858281 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	186 bp upstream
Rr525901	regulatory region 525901	497 bp proximal
Tssr143785	transcription start site region 143785	1495 bp downstream
Tssr143786	transcription start site region 143786	1477 bp downstream
Tssr143787	transcription start site region 143787	1197 bp downstream
Tssr143788	transcription start site region 143788	1184 bp downstream
Tssr143789	transcription start site region 143789	1166 bp downstream
Tssr143790	transcription start site region 143790	1892 bp upstream
Tssr147440	transcription start site region 147440	604 bp downstream