rs33202145 SNP Detail

Summary

• ID
  rs33202145
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115116510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTTGTTAT TTTGTTTTGT TGTTTTTTGC AAGGCATCCA
  GACAGGTGTG TCTGTGTTAC CGGCTAGATC TCTCTAAGAT CCTTCTAGGA TCCATGGTTC
  R
  GGAACTTCAC CTTTCCAGGG TCTCCACAGA CATAGTAAAT GTTAAAAAAA ACAGCTGTGC
  AGGTTTAATC CCAAACGCTG GGATTAGAGG CCTGCGCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45749638	mCV24915493	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss149119823	ENSMUSSNP6730	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321653997	CHEV_5_115428460	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33202145					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115116510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16346	CpG island 16346	799 bp proximal
Gm71622	predicted gene, 71622	within coordinates
Gm71625	predicted gene, 71625	within coordinates
Hnf1aos1	HNF1 homeobox A, opposite strand 1	within coordinates
Rr618085	regulatory region 618085	450 bp proximal
Rr618086	regulatory region 618086	556 bp proximal
Rr618087	regulatory region 618087	938 bp proximal
Rr618088	regulatory region 618088	1967 bp proximal