rs33202343 SNP Detail

Summary

• ID
  rs33202343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166901639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGATTTA CACACACACA
  CACATCATTA AAAATTAATG CTATTGGTTA TCCTTTTAAA TTTCCTAACG ATGCTATTGG
  CGATTAGACG CAGTTTCTAT TGGGCAGCCC GGCTGCAAAC CACCAGTCAG TCTGTTTCTC
  ACCTCCTACC ACCTGCGGGG AACCAAAAAG GAACCTTCCA GGAGGCAAGG GCTCTAACTC
  Y
  CCAGCCCTGG TTTGGGAGGC AAGCTTTCAG CAAGGAGCTC AGAGTGGCCT TAATCTCACA
  GTTTAGCTGG TCTCAAATTC TCAAGCCTCT TCTCCCTGCT GGATTGACAG GCCTACCGTC
  CTACCACAGA ACCGTCTGCA GCTCTCCTAG GGAGACCAGG CTGGCCTCAG GTCTGCCTGC
  CTCTGCCTCC CCAGTGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45249555	mCV22943187	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33202343					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166901639 () rs orientation: forward

Symbol	Name	Function Class
Gm75600	predicted gene, 75600	833 bp upstream
Rr570435	regulatory region 570435	1003 bp distal
Rr570436	regulatory region 570436	within coordinates
Rr570437	regulatory region 570437	707 bp proximal
Rr570438	regulatory region 570438	844 bp proximal
Rr570439	regulatory region 570439	1671 bp proximal
Tssr21785	transcription start site region 21785	827 bp downstream
Tssr21786	transcription start site region 21786	797 bp upstream
Tssr21787	transcription start site region 21787	1551 bp upstream
Tssr21788	transcription start site region 21788	1572 bp upstream
Tssr27731	transcription start site region 27731	335 bp downstream
Tssr27732	transcription start site region 27732	383 bp downstream
Tssr27733	transcription start site region 27733	419 bp downstream
Tssr27734	transcription start site region 27734	698 bp downstream
Tssr27735	transcription start site region 27735	728 bp downstream
Tssr27736	transcription start site region 27736	1112 bp downstream
Tssr27737	transcription start site region 27737	1119 bp downstream
Tssr27738	transcription start site region 27738	1130 bp downstream
Tssr27739	transcription start site region 27739	1350 bp downstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates