rs33203888 SNP Detail

Summary

• ID
  rs33203888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127818824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCTTGT TCTCGAGAAG
  GCAGTGATGC TTTGCTGAGA GCAGACACCT GAGAGGTTGC TTGATGTTTA GAAAGAACAT
  AAACAAAACC CCACAGACAA TGAGAGGGCG CTCAAGTATT TTTCCTTTAA ATGTCCCCTT
  TGCTCTCTTT TTAAACTCCT AAGTACCTGT AACAGGAGAA CATTAAACAT AGAAAACATA
  Y
  AAAACAGACA TGTAAAGGAA CTCAGAAAAT GATGATAGCA GATTGTTACA GAAACAGTAA
  GAGTATTCGG GCTTGGTAGG GCAGAAACAA AGACAGTGTG CATGCAGCAA AGGGGCCTAG
  CATAGTCTAC ATCTCTAGTC TTCTGCAAAC CATAGGACCC CCTGCGTGGT GCCACAGATC
  AGATGGAATT CTACTGTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47269528	NES11576177	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	T	T	C	C	C	C
ss145887665	ENSMUSSNP1075401	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33203888					SNP	T	T	C	C	C	T	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47269528	NES11576177	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127818824 () rs orientation: forward

Symbol	Name	Function Class
Gm44850	predicted gene 44850	within coordinates
Itgad	integrin, alpha D	within coordinates
Tssr75086	transcription start site region 75086	1216 bp downstream
Tssr75087	transcription start site region 75087	1238 bp downstream