rs33204787 SNP Detail

Summary

• ID
  rs33204787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127819018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATACAAA ACAGACATGT
  AAAGGAACTC AGAAAATGAT GATAGCAGAT TGTTACAGAA ACAGTAAGAG TATTCGGGCT
  TGGTAGGGCA GAAACAAAGA CAGTGTGCAT GCAGCAAAGG GGCCTAGCAT AGTCTACATC
  TCTAGTCTTC TGCAAACCAT AGGACCCCCT GCGTGGTGCC ACAGATCAGA TGGAATTCTA
  Y
  TGTGGTAAAT GTGGGATCAA CATCCATATG GACCAGAACC ATCTTGTTCT GGACAGGATT
  TATAAGGTCC CTCAGGTGGG AAGGGACACT GGGTTTGGGA GGTGCCTGAC TGTAGCAGTT
  TCTTCTGAAA TTAAGACCTT TCATATCTGA AGGAATGAAA AATTCTTAAG ACGGGATGTT
  TTCTGGGAGG TGAACCAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47269537	NES11576180	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33204787					SNP	T	C	C	C	T	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47269537	NES11576180	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127819018 () rs orientation: forward

Symbol	Name	Function Class
Gm44850	predicted gene 44850	within coordinates
Itgad	integrin, alpha D	within coordinates
Tssr75086	transcription start site region 75086	1022 bp downstream
Tssr75087	transcription start site region 75087	1044 bp downstream