rs33205509 SNP Detail

Summary

• ID
  rs33205509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:100819117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGT CAAAAATTCC TTCTCATACC
  Y
  ATGTCCCAAC CCCACAAAAA CCCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45750392	mCV24432541	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss148928028	ENSMUSSNP6632841	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T		C
ss321627392	CHEV_5_101100270	CHEVERUD	SCREENING_POP	f	SNP					T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33205509					SNP	C	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100819117 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq2	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase			Intron
				Noncoding-Transcript-Variant
Gm15777	predicted gene 15777			within coordinates
Rr615537	regulatory region 615537			196 bp proximal
Rr615538	regulatory region 615538			337 bp proximal
Rr615539	regulatory region 615539			1203 bp proximal