rs33205540 SNP Detail

Summary

• ID
  rs33205540
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84625725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTAGGAAT CTAAGTCCGA TCCGCTGCCC TACTTCTCCG
  AGTCCATCAC CTGCAGTGTA GTTCTTACGT TGTGGAAATC TGCACCGGGC TTTTGCTCTC
  K
  CCATCAACCT AAAATTCAAT TTTTTTTTTC TTCCCTACCC ACCCCCTCCA AAACCAGACG
  CTTGAGGCGT TTATAGATAC TAACCTCTCC TCCGCTCCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss46247461	mCV24180755	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss322746688	CHEV_8_86422995	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs33205540					SNP	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84625725 () rs orientation: forward

Symbol	Name	Function Class
Adgrl1	adhesion G protein-coupled receptor L1	1009 bp upstream
Cpgi20661	CpG island 20661	1613 bp distal
Cpgi20662	CpG island 20662	289 bp proximal
Gm26721	predicted gene, 26721	within coordinates
Tssr78300	transcription start site region 78300	862 bp upstream
Tssr78301	transcription start site region 78301	992 bp upstream
Tssr78302	transcription start site region 78302	1000 bp upstream
Tssr78303	transcription start site region 78303	1018 bp upstream
Tssr78304	transcription start site region 78304	1351 bp upstream
Tssr78305	transcription start site region 78305	1496 bp upstream
Tssr78306	transcription start site region 78306	1524 bp upstream
Tssr78307	transcription start site region 78307	1610 bp upstream