rs33206723 SNP Detail

Summary

• ID
  rs33206723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127820414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGTTTTG CAGAAGCTGA
  AATGTGCAGG TTTCTAGTTA AGGCAGTTTT ATATTTAGCA AACAGAACTT GCTGTCTATG
  CTCTTTTCCA GAAAAAGAAG GCACACACAG CAGGTTTAGA AAAGCAGGCA TCAGTCATTC
  GGTTTCGGCT CTGTTGTCCC AGCTCAGACA TAGTTACTGT CTTCTGACTC TGATGCAACC
  Y
  AGTATTTCCT TAGTAAGCTC ATCATGTTTG ATTAGTGTTA AAGCTTGCTA TTTTCCTTCT
  GCTCTTCACA CACACTGTTC TTTCTGAGCC ACCACAACCA TCCCTTCTTA TAAACCCTGT
  CGCCCGCCTA GCCCAGGCTT TATTTTTCTT ACCTCTAGAT TACAGTCTGT TTTCTACATA
  GCCTTTATTG GCGGTAGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47269573	NES11576143	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33206723					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47269573	NES11576143	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127820414 () rs orientation: forward

Symbol	Name	Function Class
Gm44850	predicted gene 44850	454 bp upstream
Itgad	integrin, alpha D	within coordinates
Tssr75086	transcription start site region 75086	363 bp upstream
Tssr75087	transcription start site region 75087	328 bp upstream