rs33206949 SNP Detail

Summary

• ID
  rs33206949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:82070423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCCTGAG CAAACCCAGG
  AGCCTGCTGC TAGTATGGAC TTTCAGGCTT GCAACTGGCT AGCTCTAGGT GATGCGAGAA
  CCAGAGGCAC CGGTGTTTGC CCCTCTCCAC CTTTGATTTT GCTTCCCTCA GGGGAGGTGG
  TTTCTGCCCC AGAGGACACC CAGAGGTTTC TGTTTGGAGA CAGAAGCTTT ATAGGTAGGG
  R
  TGTGCATATT GATGAGATAG TTGCAGCCAC ACAAAACTTA TTGGAAAAAC CCCAGAGGAG
  AGAGAGGCAG CAGTGCTGTT AGGGGACCGA GGTTTGTTAA GGGAAAGGAT GCTCAGTTGA
  TTATGTGGTT CCTGCAGCGT CAACTTACCA GGGAAACCCT GCGGGACATT CAGTCACGCT
  GGTCTAAATG ATGTAGAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46247952	mCV23366347	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss322727476	CHEV_8_83867693	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33206949					SNP	G	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:82070423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20635	CpG island 20635	761 bp distal
Gm51582	predicted gene, 51582	1131 bp upstream
Inpp4b	inositol polyphosphate-4-phosphatase, type II	within coordinates
Rr666048	regulatory region 666048	1222 bp distal
Rr666049	regulatory region 666049	within coordinates
Tssr78167	transcription start site region 78167	1284 bp downstream
Tssr78168	transcription start site region 78168	1249 bp downstream
Tssr78169	transcription start site region 78169	1219 bp downstream
Tssr78170	transcription start site region 78170	1177 bp downstream
Tssr78171	transcription start site region 78171	1076 bp downstream