rs33206982 SNP Detail

Summary

• ID
  rs33206982
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144036732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACAGTCG GCCCAGGGCT
  GGGCTAGGTC GGGGCTGTGG ATGCTCAGTT ATTTGTGGGA TTGGGGTGAA GCCATCGATG
  AAGTCATACA TATTCCAGGT GTGTCTTGAC GAATGAAAGG ATGCGCATCT GCCAGGTGAA
  CAAGAGGGGG CAGGAAGGGC TGGCTGTCTT GGCAGAGGAG CTGGCTTGAG CTCACTGCTA
  S
  GTCAGTAAGT GAAGTCAGAA ACATTCTGTG CTTGATCAAT TAAAATTTTT AAAAATTTCA
  ACGTTTCCTC AAGAGCTTAT CTGATATGAG GGTCAGCCTA AGAAGAAGAG GCTAAGAAAG
  TTCTGATAAG TGAAAATGAA GAAAGTAAAA CCGGGGATAA AATACCGAGA ACCATGTTGG
  TAAAAATTAG AAAAGAAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45750557	mCV23378247	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss144607472	ENSMUSSNP239927	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321709182	CHEV_5_144860783	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33206982					SNP	G	C	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144036732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17002	CpG island 17002	262 bp proximal
Gm71407	predicted gene, 71407	1709 bp downstream
Gm71412	predicted gene, 71412	within coordinates
Lmtk2	lemur tyrosine kinase 2	522 bp upstream
Rr111125	regulatory region 111125	within coordinates
Rr124743	regulatory region 124743	within coordinates
Rr399492	regulatory region 399492	90 bp upstream
Tssr49686	transcription start site region 49686	439 bp upstream
Tssr49687	transcription start site region 49687	473 bp upstream