rs33207232 SNP Detail

Summary

• ID
  rs33207232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127820606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAACCCA GTATTTCCTT
  AGTAAGCTCA TCATGTTTGA TTAGTGTTAA AGCTTGCTAT TTTCCTTCTG CTCTTCACAC
  ACACTGTTCT TTCTGAGCCA CCACAACCAT CCCTTCTTAT AAACCCTGTC GCCCGCCTAG
  CCCAGGCTTT ATTTTTCTTA CCTCTAGATT ACAGTCTGTT TTCTACATAG CCTTTATTGG
  Y
  GGTAGGGTAG AGATACGGTG GGATGGGGTG GGGTGGGGTG GGGTTTGTTT TCTTCATCTT
  CCAATTACTT TACACAGGTT GCAAAGCACG TTTGTTCTAG TAGGTCATAG CTTCCTGCTC
  TGTGGCTCTG GATAGCAAGA AACTGCTACA ATTTGAGCAG CACTCTGGGA TAAAGAGTAA
  GGTGTCCAAC CTCTCGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47269582	NES11576146	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C
ss145887735	ENSMUSSNP6335121	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33207232					SNP	T	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47269582	NES11576146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127820606 () rs orientation: forward

Symbol	Name	Function Class
Gm44850	predicted gene 44850	646 bp upstream
Itgad	integrin, alpha D	within coordinates
Tssr75086	transcription start site region 75086	555 bp upstream
Tssr75087	transcription start site region 75087	520 bp upstream