rs33207247 SNP Detail

Summary

• ID
  rs33207247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:108501223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGTAAAC TGAATCCATT
  TAGTGCTGCC TTTATGTGAA TGAATATGAG TAATTGCTAG AGCATGGATA GTGTCTCAGA
  GACCATATGG AAAAGAATCC AACCTTCACC CGGCTGTCAG GGGTATTTAA TAAAGGGTTG
  GTGAAAACAC TGGGTAACTA ACATTCAAAC TGACATTCAA GATGGCAATG CCATTTGCTG
  R
  GTATAGATAA CAGCAATTTG AGATGAGACT TACTAGGATG TTGTTGTTAT AATAGAATAG
  GGAATTTCAC AGGGCACAGT TGGACTTCAA GAACCAGGAC AAAAATAAAG TATCACATAA
  GTTATAAAAG ACTGGGCTGA TGTTCACTTT TTTAGCAGGT CCATCATTGA CCATACAAAA
  TCTCTCCACT TTATAAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49456292	NES12804015	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33207247					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49456292	NES12804015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:108501223 () rs orientation: forward

Symbol	Name	Function Class
Gm70690	predicted gene, 70690	within coordinates
Rr416685	regulatory region 416685	1113 bp distal