rs33207252 SNP Detail

Summary

• ID
  rs33207252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:108499244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATATAGT TTTGATTGTC
  TCGGCAACTT CTATCAGTCA TAAGTCATTA TGACCAGATA TATCTCAGTC TATTTGCTTG
  AAGGAGTCTT TTATCATACA GACTTGGAAA TCTGTTCTCT TACTTTCTTT AACTTTGATA
  TGACATGAAA AAGTATTATT GAGCCTCACT AGGCATATAT CAGGTTTTTG AGACAGGGCA
  Y
  TTGAAAATGA CTCTAACAAG GAGAATGAAG ACATGAAAGA TCAATTATAA ACAAAACATT
  TAGAAGGTTT TGCAAAAGCT AGTGAGATAG CTCAGTGAGT AAATATGTTT GCTGCCAATC
  GTGATGATCT AATTTCCAGG ACCTATTGAT AGAAAGAAAG AATTTTCTCC TGCAAGTTTT
  CATTGATATC CACATATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss49456298	NES12804047	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs33207252					SNP	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49456298	NES12804047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:108499244 () rs orientation: forward

Symbol	Name	Function Class
Gm70690	predicted gene, 70690	856 bp upstream
Rr416685	regulatory region 416685	484 bp proximal