rs33207359 SNP Detail

Summary

• ID
  rs33207359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84925865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACT CTGCATCTGA GGGCAGGTTG
  R
  TGAGGTCTCT GAGGGGCACA GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46248091	mCV24182192	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145374866	ENSMUSSNP1486164	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss322748099	CHEV_8_86723135	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33207359					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84925865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20681	CpG island 20681	1163 bp distal
Cpgi20682	CpG island 20682	424 bp distal
Cpgi20683	CpG island 20683	906 bp proximal
Gm26887	predicted gene, 26887	512 bp upstream
Gm37352	predicted gene, 37352	1633 bp upstream
Gm56830	predicted gene, 56830	651 bp upstream
Gm56836	predicted gene, 56836	38 bp downstream
Gm64014	predicted gene, 64014	741 bp downstream
Gm64130	predicted gene, 64130	1901 bp downstream
Gm65345	predicted gene, 65345	1708 bp upstream
Rr186982	regulatory region 186982	64 bp distal
Rr186983	regulatory region 186983	535 bp proximal
Rr368563	regulatory region 368563	1677 bp downstream
Tssr2623	transcription start site region 2623	1758 bp upstream
Tssr2624	transcription start site region 2624	450 bp downstream
Tssr78371	transcription start site region 78371	1820 bp downstream
Tssr78372	transcription start site region 78372	1599 bp upstream
Tssr78373	transcription start site region 78373	1624 bp upstream
Tssr78374	transcription start site region 78374	1695 bp upstream
Tssr82076	transcription start site region 82076	1643 bp upstream
Tssr82077	transcription start site region 82077	1556 bp upstream
Tssr82078	transcription start site region 82078	1277 bp upstream
Tssr82079	transcription start site region 82079	872 bp upstream
Tssr82080	transcription start site region 82080	842 bp upstream
Tssr82081	transcription start site region 82081	813 bp upstream
Tssr82082	transcription start site region 82082	1381 bp downstream
Tssr82083	transcription start site region 82083	1494 bp downstream