rs33207644 SNP Detail

Summary

• ID
  rs33207644
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41367421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAC AAACATATAT AGAGGGAATA
  K
  ATTTTGTGTT AAACAGTCTA TAGTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46247380	mCV24417995	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G	T
ss144675751	ENSMUSSNP2681061	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss322633691	CHEV_8_41999738	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33207644					SNP	T	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41367421 () rs orientation: forward

Symbol	Name	Function Class
Rr662625	regulatory region 662625	350 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77038	transcription start site region 77038	1747 bp downstream
Tssr77039	transcription start site region 77039	384 bp downstream
Tssr77040	transcription start site region 77040	302 bp downstream
Tssr77041	transcription start site region 77041	527 bp upstream
Tssr77042	transcription start site region 77042	669 bp upstream
Tssr77043	transcription start site region 77043	1264 bp upstream
Tssr77044	transcription start site region 77044	1454 bp upstream
Tssr77045	transcription start site region 77045	1476 bp upstream