rs33208091 SNP Detail

Summary

• ID
  rs33208091
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127820895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTCTCGAA GGCCTTTACC CCTCCCTCGG GGGCCCATCT
  GCCTGCTCTA GGGATTAATG TAGTCGTCCT CTACCCTAGC TGTGTAACAG AATTACCCAG
  S
  ACATTTACAA AATTGGTTTG GCTTGGCTGT AGGAATAGTA ATTAGCCAAT GTTGAGGAAA
  CTCCAAGGTA AAGGACTCAG TTTGCCTTCA GAAACCTCCT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47269591	NES11576149	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33208091					SNP	G	G	G	G	C	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47269591	NES11576149	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127820895 () rs orientation: forward

Symbol	Name	Function Class
Gm44850	predicted gene 44850	935 bp upstream
Itgad	integrin, alpha D	within coordinates
Tssr75086	transcription start site region 75086	844 bp upstream
Tssr75087	transcription start site region 75087	809 bp upstream