rs33208336 SNP Detail

Summary

• ID
  rs33208336
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30746726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGGGGTGGGT TGCGTGTGTC CGTGTGGGTG TGTGAGTGTG AGTGTGAGTG TGTGTCCACC
  TCCATGAGTT TGGGCTGCAC CAGACAGGGC CTGTAATTCT CTGAGGGCAG CAGATCAGGG
  GCTGGAATCC AGATTCTGTC CTGTTAGCCT TCTTCCCCAG TGTCCCAGTA AAACAGTCAC
  CTCACGGGAA TGGCTCCACT TCTTTTCCAA AGCCAGGGCA GATCATGCTG TAGGAGGCCA
  TACACACACC CAGCTCCTCT GAGAACATGA CACACAGGTA CACACACACA CACACACACA
  S
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG CACAAATAGA TGTCTGCCAG GAAAAGCACC
  TCAAGACAGG CCCTTTGCCG TGTTGCTGAA GTATCCAACC AGGATTACAC AGTGTAACCA
  TTCCCAGGAC CCTGTGATTT GCAGCCCAGC TCCACCACCT CTGCATGACC GACCTTGGTC
  AAGTTCCTTC TGCTGCCTGG ATCTTGGGCT CATGTCCCAA CATGTAGAGG TTGGCCAAAA
  GGATGTCAAG GGCTCTTCCC AGCCCTGACG TGCTTGGACT CTGAGATTGG GAACCCACCT
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45750601	mCV25172987	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	G
ss148186446	ENSMUSSNP642504	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33208336					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30746726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15680	CpG island 15680	150 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Gm9899	predicted gene 9899	763 bp upstream
Kcnk3	potassium channel, subfamily K, member 3	within coordinates
Rr124994	regulatory region 124994	within coordinates
Tssr45584	transcription start site region 45584	1976 bp downstream
Tssr45585	transcription start site region 45585	1331 bp downstream
Tssr45586	transcription start site region 45586	1211 bp downstream
Tssr45587	transcription start site region 45587	1197 bp downstream
Tssr45588	transcription start site region 45588	1162 bp downstream
Tssr45589	transcription start site region 45589	674 bp upstream
Tssr50495	transcription start site region 50495	903 bp upstream
Tssr50496	transcription start site region 50496	631 bp upstream
Tssr50497	transcription start site region 50497	607 bp upstream