ATTCACCATC TCTGAAATCT TCCCAAATGC CCTTGACAGC ACTAGGCGCA CACCTGGGCG TGTTTCCAGC TTACACCTGC TGAGAGAAGC TACACGGTGA K GAGTTGTTTG AACAAGGGCC AACAGGTAAA CAGCAGACAA ACCACGGAGT CAGACTTTCA ACCTGGCAGT GGAGGATGCT CAGGATAAAC CAATCATTG K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss39508044 | mCV25027481 | ABI | CRAMUS_MOUSE | f | SNP | G | G | T | G | ||||||||||||||
ss60539091 | NES16556340 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | T | T | G | G | G | G | G | |||
ss145202480 | ENSMUSSNP5258577 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | ||||||||||||||||
ss325306435 | CHEV_17_15334219 | CHEVERUD | SCREENING_POP | f | SNP | G | G | ||||||||||||||||
SNP Consensus Information | |||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs33209158 | SNP | G | G | G | G | G | G | T | G | G | T | T | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60539091 | NES16556340 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr17:15417517 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm35502 | predicted gene, 35502 | within coordinates | ||||||
Rr329518 | regulatory region 329518 | 1484 bp proximal | ||||||
Rr334312 | regulatory region 334312 | 1284 bp proximal | ||||||
Rr340587 | regulatory region 340587 | 1118 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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