rs33209158 SNP Detail

Summary

• ID
  rs33209158
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:15417517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCACCATC TCTGAAATCT TCCCAAATGC CCTTGACAGC
  ACTAGGCGCA CACCTGGGCG TGTTTCCAGC TTACACCTGC TGAGAGAAGC TACACGGTGA
  K
  GAGTTGTTTG AACAAGGGCC AACAGGTAAA CAGCAGACAA ACCACGGAGT CAGACTTTCA
  ACCTGGCAGT GGAGGATGCT CAGGATAAAC CAATCATTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39508044	mCV25027481	ABI	CRAMUS_MOUSE	f	SNP	G	G					T		G
ss60539091	NES16556340	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	G	T	T		G	G	G	G		G
ss145202480	ENSMUSSNP5258577	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss325306435	CHEV_17_15334219	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33209158					SNP	G	G	G	G	G	G	T	G	G	T	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60539091	NES16556340	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:15417517 () rs orientation: forward

Symbol	Name	Function Class
Gm35502	predicted gene, 35502	within coordinates
Rr329518	regulatory region 329518	1484 bp proximal
Rr334312	regulatory region 334312	1284 bp proximal
Rr340587	regulatory region 340587	1118 bp distal