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rs33209158 SNP Detail
Summary
  • ID
    rs33209158
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr17:15417517 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ATTCACCATC TCTGAAATCT TCCCAAATGC CCTTGACAGC
    ACTAGGCGCA CACCTGGGCG TGTTTCCAGC TTACACCTGC TGAGAGAAGC TACACGGTGA
    K
    GAGTTGTTTG AACAAGGGCC AACAGGTAAA CAGCAGACAA ACCACGGAGT CAGACTTTCA
    ACCTGGCAGT GGAGGATGCT CAGGATAAAC CAATCATTG                       
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss39508044 mCV25027481 ABI CRAMUS_MOUSE f SNP G G T G
ss60539091 NES16556340 PERLEGEN MM_PANEL2 f SNP G G G G G G G G T T G G G G G
ss145202480 ENSMUSSNP5258577 ENSEMBL ENSEMBL_Sanger f SNP G G
ss325306435 CHEV_17_15334219 CHEVERUD SCREENING_POP f SNP G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs33209158 SNP G G G G G G T G G T T G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60539091 NES16556340 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:15417517 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm35502 predicted gene, 35502 within coordinates
Rr329518 regulatory region 329518 1484 bp proximal
Rr334312 regulatory region 334312 1284 bp proximal
Rr340587 regulatory region 340587 1118 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory