rs33209534 SNP Detail

Summary

• ID
  rs33209534
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127818296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGAATAT CACCTGTGAA
  GAAACTCGAG CCAACACTGT TTGGGTCTAA AGTGGACAGG TCAAACCTAA CCTCCACGGC
  CAACTTTTCA GCAATCTTAA AGAGCATATG GAAATTTACC AATGTTATCC ATGCCCAAAG
  GCATTTAAAA AATAAAACTG AACCCAGTGC TTTATATTGG ATAACAAACT CATTGTTGAG
  K
  CCAGTGACAA TTATGTGGAC CTAAAACATC TGCCCTGCTT TTATTCTGTG GAGAGTCATC
  CAAATGTGTT TTCTATGCCA GATCTGATGG AGACTCACAA GACACAGACA GCATCATTCT
  TTGAGAAAAC TGTAAGAAAT AGAACATTTG ATTTTTAAAT GTTCTGTATA TCTGTAATTT
  ACAGATATGA TATCTGTAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47269519	NES11576205	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	G	T	G	G	T	T	G	G	T	G
ss145887632	ENSMUSSNP6772143	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33209534					SNP	T	T	G	G	G	T	G	T	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47269519	NES11576205	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127818296 () rs orientation: forward

Symbol	Name	Function Class
Gm44850	predicted gene 44850	within coordinates
Itgad	integrin, alpha D	within coordinates
Tssr75086	transcription start site region 75086	1744 bp downstream
Tssr75087	transcription start site region 75087	1766 bp downstream