rs33209666 SNP Detail

Summary

• ID
  rs33209666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152535127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTG AGAAGCACTG CCTTACAGTC
  R
  CCCAGTGTCT AGCTTCCCCA GTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45250418	mCV27576177	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss147971962	ENSMUSSNP6808840	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
ss320563170	CHEV_2_152518943	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33209666					SNP	A	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152535127 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567430	regulatory region 567430			989 bp distal
Rr567431	regulatory region 567431			1090 bp distal
Rr567432	regulatory region 567432			within coordinates
Rr567433	regulatory region 567433			213 bp proximal
Rr567434	regulatory region 567434			1526 bp proximal
Tssr20823	transcription start site region 20823			1779 bp upstream