rs33209804 SNP Detail

Summary

• ID
  rs33209804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71556764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTATGT ATCTTTTTCA
  TTCAAGGAGC AATGGCTGCT CTTTCTGAGG ACCTGGGTTT GAGTATCAGC ACCCATGTGA
  TGGATCACAG CCATCTGTAA CGACAGTTTG AGAACTGACA TTCCTGGGAC CAGGTGAAGG
  GACTCTAGAC AGCTGGAGCA CAGCAAACAT GGCCCTGGCA AGTCTTGCCC TTCTCCCATT
  Y
  TTTCTGCCTT GGTAGAAAAT GTTAGATTAT ATTTCTAAAG CTAGCCCCCA AGGTCCATTC
  CCTTATTTGG CCACTTTCTC CCCTGAGGCT AACAACCATG GTTTAGCTAT CAAAGTATTG
  AAGTACAGCA ATCAAAAGTC CCTTTTTGGC TCACCTAATA AACATGCCCA ATTAAAATTA
  AACTCTTCAT CCTAACACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45251017	mCV22332266	ABI	CRAMUS_MOUSE	f	SNP	T	T		C	C
ss146748925	ENSMUSSNP4723507	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33209804					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71556764 () rs orientation: forward

Symbol	Name	Function Class
Platr26	pluripotency associated transcript 26	within coordinates
Rr558814	regulatory region 558814	800 bp proximal