rs33209896 SNP Detail

Summary

• ID
  rs33209896
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156045142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTTCTCA AAGAACCAGC
  TCCTGGTTTT GTTGATTCTT TGTGCAGTTC TTTTTGTTTC TATTTGGTTG ATTACAGCCC
  TGAGTTTGAT TGTTTCCTGC CTCTTCTCCA CTTGGTGTTT GCTTCTTTTT GTTCTAGAGC
  TTTCAGGTGT GCTGTCAAGG TGTCAAGCTC TCTCAGGAAT TTTTTTTTTT TTTAAACAGG
  R
  CCTCATGTAA CTCAGGCTGG ACTTTAATTC TCTGTCTGCC TCCTAGGTGC TATTATTTTA
  GGCCGGAGTA GCCTTTGCAT CTATAGTGAG CCACCGGTTC CTGTTTTCTC CAGGGCTTGG
  ATGAGAGCCA ATAGCAGATG CTCCTAGGGG CCACTTTGGT CAGGGTATTT GTGATCCAGT
  GTAGGATCCT CTTGGTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46785651	NES10990680	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33209896					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46785651	NES10990680	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156045142 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	1633 bp upstream
Cpgi15495	CpG island 15495	1619 bp proximal
Gm68249	predicted gene, 68249	within coordinates
Rr606617	regulatory region 606617	953 bp distal
Rr606618	regulatory region 606618	1231 bp distal
Rr606619	regulatory region 606619	1143 bp proximal
Tssr40744	transcription start site region 40744	1607 bp upstream
Tssr40745	transcription start site region 40745	1657 bp upstream
Tssr40746	transcription start site region 40746	1726 bp upstream
Tssr40747	transcription start site region 40747	1856 bp upstream
Ube2j2	ubiquitin-conjugating enzyme E2J 2	1081 bp downstream