rs33209899 SNP Detail

Summary

• ID
  rs33209899
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156045225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGATTGT TTCCTGCCTC
  TTCTCCACTT GGTGTTTGCT TCTTTTTGTT CTAGAGCTTT CAGGTGTGCT GTCAAGGTGT
  CAAGCTCTCT CAGGAATTTT TTTTTTTTTT AAACAGGGCC TCATGTAACT CAGGCTGGAC
  TTTAATTCTC TGTCTGCCTC CTAGGTGCTA TTATTTTAGG CCGGAGTAGC CTTTGCATCT
  M
  TAGTGAGCCA CCGGTTCCTG TTTTCTCCAG GGCTTGGATG AGAGCCAATA GCAGATGCTC
  CTAGGGGCCA CTTTGGTCAG GGTATTTGTG ATCCAGTGTA GGATCCTCTT GGTTATTTTC
  CAAGTTGTTT GTGGCAGGGA GATATTGAAG CTGGAAAACT GGAAACTTGA GTCCATCCCT
  AGCCACAACA TGAGGTCCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46785654	NES10990681	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33209899					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46785654	NES10990681	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156045225 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	1550 bp upstream
Cpgi15495	CpG island 15495	1536 bp proximal
Gm42365	predicted gene, 42365	1976 bp upstream
Gm68249	predicted gene, 68249	within coordinates
Rr606617	regulatory region 606617	1036 bp distal
Rr606618	regulatory region 606618	1314 bp distal
Rr606619	regulatory region 606619	1060 bp proximal
Tssr40744	transcription start site region 40744	1524 bp upstream
Tssr40745	transcription start site region 40745	1574 bp upstream
Tssr40746	transcription start site region 40746	1643 bp upstream
Tssr40747	transcription start site region 40747	1773 bp upstream
Ube2j2	ubiquitin-conjugating enzyme E2J 2	1164 bp downstream