rs33210332 SNP Detail

Summary

• ID
  rs33210332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31275511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTTTTT TTTTAATCTG
  AATTTTATTT TTATTTTTTT TCTATCCTTT TTTTTTCCAT TTTTTATTAG GTATTTAGCT
  CATTTACATT TCCAATGCTA TACCAAAAGT CCCCCATACC CACCCACCCC CACTCCCTTA
  CCCACCCACT CCCCCTTTTT GGCCATGGTG TTCCCCTGTA CTGGGGCATA TAAAGTTTGC
  R
  TGTCCAATGG GCCTCTCTTT CCAGTGATGG CCGACTAGGC CATCTTTTGA TACATATGCA
  GCTAGAGTCA AGAGCTCCGG GGTACTGGTT AGTTCATAAT GTTGTTCCAC CTATAGGGTT
  GCAGATCCCT TTAGCTCCTT GGGTACTTTC TCTAGCTCCT CCATTGGGAG CCCTGTGATC
  CATCCATTAG CTGACTGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39508161	mCV24389011	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss145455202	ENSMUSSNP1812010	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33210332					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31275511 () rs orientation: forward

Symbol	Name	Function Class
Abcg1	ATP binding cassette subfamily G member 1	1157 bp upstream
Cpgi8940	CpG island 8940	728 bp proximal
Rr525355	regulatory region 525355	660 bp proximal
Rr525356	regulatory region 525356	1201 bp proximal
Rr525357	regulatory region 525357	1526 bp proximal
Rr525358	regulatory region 525358	1726 bp proximal
Tssr143637	transcription start site region 143637	1149 bp upstream
Tssr143638	transcription start site region 143638	1167 bp upstream
Tssr143639	transcription start site region 143639	1182 bp upstream
Tssr143640	transcription start site region 143640	1203 bp upstream
Tssr143641	transcription start site region 143641	1231 bp upstream