rs33210876 SNP Detail

Summary

• ID
  rs33210876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:52521876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGAGGGTGG TGGGACAAAG CTTTCTGCTC TGGGCCTGCA GTGGCTGGGC CAGGAGGTCT
  TTCGTGCTAT AAATGTCATG TATGGAAGGC TGTCTGTGGA CGCTGAGGGG CTTGGGGTGG
  AGTTAGGGAG GATGAGCAGG GACTCTGAGG GGTCACCTGG GTTCTGTCAG CCATGGCTTA
  CAGCAAAGGC TTCTTATAAG GAGCCACTGA GGAAGAAAAT GCCTGGGGGA AGGGAGACAC
  TCGAACAAGG AGTCTAGGTT TACCTGGAGG TGCAGAAAGA TGCTCTTTTT TGTTTCGCTT
  Y
  ATTTCTTAAG AGAATATATA TATATATATT TTTTTTCAAG TGTTCATTTT TAGAGAAGCC
  CACAAACACA CTCCAGTTGG ATTTTGCTCT AGGCTCTGCA GGAAGAATTC CTGAAGTGAA
  GCCTGAGCAC AGAACATTCC TAAGTGACAG CTGCCTCAGG AGAGGGTCAG AGTCCCTGTC
  CAGTGAGAGA GCTGGGGGCA AGATGCATGA GGCTCCTCCT GTACTTCACC CTCTCCCGCT
  ATGCTCTAAC GGCAGGGTCA CACTAGGCCA CATCAAAGGG GAGGGGTCTG TAGGTTTTAC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45750466	mCV25026717	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss148440021	ENSMUSSNP2083200	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33210876					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52521876 () rs orientation: forward

Symbol	Name	Function Class
Rr611420	regulatory region 611420	733 bp distal
Rr611421	regulatory region 611421	438 bp distal
Sod3	superoxide dismutase 3, extracellular	Intron
Tssr46168	transcription start site region 46168	611 bp downstream
Tssr46169	transcription start site region 46169	579 bp downstream
Tssr46170	transcription start site region 46170	554 bp downstream