rs33211705 SNP Detail

Summary

• ID
  rs33211705
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156045657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT CTTGGCATAT ATAACACATG
  B
  ATACACACAC GCACGCACGC ACGGT                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46785672	NES10990687	PERLEGEN	MM_PANEL2	f	SNP			C		G	C			G	G	G	G	G
ss46785675	NES10990688	PERLEGEN	MM_PANEL2	f	SNP	C	C		C	T		C	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33211705					SNP	C	C	C	C	?	C	C	C	?	?	?	?	?

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46785672	NES10990687	PERLEGEN	MM_PANEL	f	SNP	C/G
ss46785675	NES10990688	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156045657 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	1118 bp upstream
Cpgi15495	CpG island 15495	1104 bp proximal
Gm42365	predicted gene, 42365	1544 bp upstream
Gm68249	predicted gene, 68249	within coordinates
Rr606617	regulatory region 606617	1468 bp distal
Rr606618	regulatory region 606618	1746 bp distal
Rr606619	regulatory region 606619	628 bp proximal
Rr606620	regulatory region 606620	1913 bp proximal
Tssr40744	transcription start site region 40744	1092 bp upstream
Tssr40745	transcription start site region 40745	1142 bp upstream
Tssr40746	transcription start site region 40746	1211 bp upstream
Tssr40747	transcription start site region 40747	1341 bp upstream
Ube2j2	ubiquitin-conjugating enzyme E2J 2	1596 bp downstream