rs33212427 SNP Detail

Summary

• ID
  rs33212427
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:74853630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG GGACATGGTC CCCGAGGTGT
  R
  GATCATCCCA TCCTCCTGCC TTAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45751110	mCV23413848	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss148674085	ENSMUSSNP2747534	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss321570424	CHEV_5_75088994	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33212427					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74853630 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lnx1	ligand of numb-protein X 1			Intron
				Noncoding-Transcript-Variant
Rr613329	regulatory region 613329			228 bp distal
Rr613330	regulatory region 613330			1441 bp proximal