rs33212589 SNP Detail

Summary

• ID
  rs33212589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25518017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG ACTGATCCTT CTGTCTCTGC
  Y
  GGGATTGATT TTCCTTACTC TTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39507990	mCV24352325	ABI	CRAMUS_MOUSE	f	SNP	T	T	C		T
ss48355872	NES12244134	PERLEGEN	MM_PANEL2	f	SNP	C			T		T		C	C	T		T
ss145383666	ENSMUSSNP2198760	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			T
ss325337064	CHEV_17_25435988	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33212589					SNP	?	T	C	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48355872	NES12244134	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25518017 () rs orientation: forward

Symbol	Name	Function Class
Prss34	serine protease 34	within coordinates
Tssr143150	transcription start site region 143150	640 bp downstream