rs33212594 SNP Detail

Summary

• ID
  rs33212594
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156045779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAC GGCTTGCTTG GTCACCTTTC
  M
  CTCTTTTTTG GAGTGAGAAT TGAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46785681	NES10990690	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	A	C	C	C	C	A		A	C	A	A		C
ss148122598	ENSMUSSNP2263359	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss321444082	CHEV_4_155335431	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33212594					SNP	C	C	C	C	C	A	C	C	C	C	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46785681	NES10990690	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156045779 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	996 bp upstream
Cpgi15495	CpG island 15495	982 bp proximal
Gm42365	predicted gene, 42365	1422 bp upstream
Gm68249	predicted gene, 68249	within coordinates
Rr606617	regulatory region 606617	1590 bp distal
Rr606618	regulatory region 606618	1868 bp distal
Rr606619	regulatory region 606619	506 bp proximal
Rr606620	regulatory region 606620	1791 bp proximal
Tssr40744	transcription start site region 40744	970 bp upstream
Tssr40745	transcription start site region 40745	1020 bp upstream
Tssr40746	transcription start site region 40746	1089 bp upstream
Tssr40747	transcription start site region 40747	1219 bp upstream
Ube2j2	ubiquitin-conjugating enzyme E2J 2	1718 bp downstream