rs33213138 SNP Detail

Summary

• ID
  rs33213138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14389147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTCCCCT GCATCATCTC
  TGTGGCTTGA CTTAACATCC CATGCTTGTA GCATTTCAGT GACACACGCG TGTGCACACA
  CACACCACAT CACAGAACAA GGTGATGCTG GCTGAATTCT TTGACTTGTC TCTTGAGTTT
  TCAGTGATGA AATTGAGAAA ACAGGTTAAG CAGAGAATGA ATGAGCCTCT AATGTCCTGG
  Y
  TTGGTGTTCA TCCTGACAAC CCCCGCCCCG GTCACCCTAT GACCCTGGGC ACTGCTCTCT
  GGGTTCTGAA TGGGGAGTGT CTCCTTGGAA CGCTGAATGG ATGATCAGAT CAAGTGAATC
  TAAAGGTCAG AACGAGGGAC AGTCCTAAGT AGTGAAGGTC ACGGGAGTGC TTGGCCTTGA
  CTTAGCTACT GATACACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39509124	mCV25271154	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145199287	ENSMUSSNP1244037	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss325306123	CHEV_17_14305892	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33213138					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14389147 () rs orientation: forward

Symbol	Name	Function Class
Gm34426	predicted gene, 34426	756 bp upstream
Rr522471	regulatory region 522471	1546 bp distal
Rr522472	regulatory region 522472	989 bp distal
Tssr142727	transcription start site region 142727	807 bp upstream
Tssr142728	transcription start site region 142728	822 bp upstream