rs33213664 SNP Detail

Summary

• ID
  rs33213664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56916088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTC AGAGATCAGA CAGTTGATCA
  Y
  TTTTTGTTGT TGTTGTTTTG TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39508360	mCV24358157	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T
ss62806727	NES17364222	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		T	T	C	C	T	C	T	T	C
ss145807848	ENSMUSSNP3621395	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33213664					SNP	C	C	T	T	T	C	T	T	T	T	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62806727	NES17364222	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56916088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9367	CpG island 9367	234 bp proximal
Gm56912	predicted gene, 56912	664 bp upstream
Micos13	mitochondrial contact site and cristae organizing system subunit 13	within coordinates
Rr370299	regulatory region 370299	554 bp upstream
Tssr145313	transcription start site region 145313	797 bp upstream
Tssr148822	transcription start site region 148822	587 bp downstream
Tssr148823	transcription start site region 148823	601 bp downstream
Tssr148824	transcription start site region 148824	716 bp downstream
Tssr148825	transcription start site region 148825	735 bp downstream
Tssr148826	transcription start site region 148826	840 bp downstream
Tssr148827	transcription start site region 148827	870 bp downstream
Tssr148828	transcription start site region 148828	900 bp downstream