rs33214226 SNP Detail

Summary

• ID
  rs33214226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156076387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCA CTGTGCCACG CGCGCAGGTA
  Y
  TCGCGGCTGA GGCGCAGGTA ATGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss46786194	NES10989728	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T	C		C
ss148124194	ENSMUSSNP572550	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				T
ss321444383	CHEV_4_155366039	CHEVERUD	SCREENING_POP	f	SNP								C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs33214226					SNP	T	T	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46786194	NES10989728	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156076387 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	Coding-Synonymous
Cpgi15496	CpG island 15496	within coordinates
Rr377473	regulatory region 377473	287 bp upstream
Rr606628	regulatory region 606628	1401 bp distal
Rr606629	regulatory region 606629	568 bp distal
Rr606630	regulatory region 606630	644 bp proximal
Rr606631	regulatory region 606631	709 bp proximal
Rr606632	regulatory region 606632	720 bp proximal
Rr606633	regulatory region 606633	962 bp proximal
Rr606634	regulatory region 606634	1323 bp proximal
Rr606635	regulatory region 606635	1458 bp proximal
Sdf4	stromal cell derived factor 4	942 bp upstream
Tssr1404	transcription start site region 1404	1009 bp upstream
Tssr40748	transcription start site region 40748	470 bp upstream
Tssr40749	transcription start site region 40749	1213 bp upstream
Tssr40750	transcription start site region 40750	1300 bp upstream
Tssr40751	transcription start site region 40751	1375 bp upstream
Tssr40752	transcription start site region 40752	1518 bp upstream
Tssr44987	transcription start site region 44987	401 bp downstream
Tssr44988	transcription start site region 44988	674 bp downstream