rs33214434 SNP Detail

Summary

• ID
  rs33214434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156046060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTT GTCCTTAGCT AGCCCAACTT
  Y
  GATCTTGAAG GGCCTTTCTC TGGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss46785702	NES10990697	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		T	T	T
ss321444090	CHEV_4_155335712	CHEVERUD	SCREENING_POP	f	SNP					T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs33214434					SNP	C	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46785702	NES10990697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156046060 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	715 bp upstream
Cpgi15495	CpG island 15495	701 bp proximal
Gm42365	predicted gene, 42365	1141 bp upstream
Gm68249	predicted gene, 68249	within coordinates
Rr606617	regulatory region 606617	1871 bp distal
Rr606619	regulatory region 606619	225 bp proximal
Rr606620	regulatory region 606620	1510 bp proximal
Rr606621	regulatory region 606621	1818 bp proximal
Tssr40744	transcription start site region 40744	689 bp upstream
Tssr40745	transcription start site region 40745	739 bp upstream
Tssr40746	transcription start site region 40746	808 bp upstream
Tssr40747	transcription start site region 40747	938 bp upstream
Ube2j2	ubiquitin-conjugating enzyme E2J 2	1999 bp downstream