rs33214440 SNP Detail

Summary

• ID
  rs33214440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156047176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT ACCACGTCCA ACCGTGAGGG
  R
  TTCCCAGGCT CCGTCAAGGT AGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss46785711	NES10990588	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		A	G
ss148122629	ENSMUSSNP3051453	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			G
ss321444099	CHEV_4_155336828	CHEVERUD	SCREENING_POP	f	SNP						A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs33214440					SNP	G	G	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46785711	NES10990588	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156047176 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	Coding-Synonymous
Gm42365	predicted gene, 42365	25 bp upstream
Gm68249	predicted gene, 68249	within coordinates
Rr606619	regulatory region 606619	391 bp distal
Rr606620	regulatory region 606620	394 bp proximal
Rr606621	regulatory region 606621	702 bp proximal
Tssr40744	transcription start site region 40744	382 bp downstream
Tssr40745	transcription start site region 40745	327 bp downstream
Tssr40746	transcription start site region 40746	299 bp downstream
Tssr40747	transcription start site region 40747	143 bp downstream