rs33214482 SNP Detail

Summary

• ID
  rs33214482
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180828669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGATGGTAG GGAGGTGCGC GGCAACAGCT TGTGCTTACT
  TATGTTAAAC AGATCCACTC AGTCAAGGGT CGGAGTGAGG TACGTGGAAA ATAAAGCCTG
  S
  GGGGACCAGC GAAAGCAGCG GGCAGCCCCA AGTAAAGGGA ACAAGAACAC CAAACAGGCT
  GTACTACATG AGACCACATC CGAGAGGGTG GCACAGACT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45250552	mCV22912889	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C	G
ss148398553	ENSMUSSNP5265496	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33214482					SNP	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180828669 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	within coordinates
Cpgi12916	CpG island 12916	within coordinates
Gm75115	predicted gene, 75115	within coordinates
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	371 bp upstream
Rr374383	regulatory region 374383	216 bp upstream
Rr572939	regulatory region 572939	within coordinates
Rr572940	regulatory region 572940	400 bp proximal
Rr572941	regulatory region 572941	471 bp proximal
Rr572942	regulatory region 572942	827 bp proximal
Rr572943	regulatory region 572943	1768 bp proximal
Tssr22287	transcription start site region 22287	399 bp upstream
Tssr22288	transcription start site region 22288	499 bp upstream
Tssr22289	transcription start site region 22289	633 bp upstream
Tssr22290	transcription start site region 22290	721 bp upstream
Tssr22291	transcription start site region 22291	760 bp upstream
Tssr22292	transcription start site region 22292	903 bp upstream
Tssr22293	transcription start site region 22293	1001 bp upstream